PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_69957E77A.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 791aa    MW: 91657.1 Da    PI: 5.528
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_69957E77A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1638.3e-20190272191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn+YA  +GF+ ++ +++ +      +k ++ C+++gk++ + +  +++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+
  Traes_5BS_69957E77A.2 190 RFYNTYALLTGFEAKRGTNYMR------KKFHLICNRSGKSRATPDL-QRKRKRKSIEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHP 269
                            5*****************9998......4678**********99988.99999******************.9*************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_5BS_69957E77A.2 270 LCP 272
                            *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-17190272IPR004330FAR1 DNA binding domain
PfamPF105511.2E-27394485IPR018289MULE transposase domain
PROSITE profilePS509669.087676712IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MGDMVTELDE AGVRNAENST EQREAYNVVD DEGSPVPLLM LPSGKEPVGN QSMTEGRLQP  60
AGDNYQEPVG KQSMTEGTLQ PAGDNDQQDP SSDSVEKNTE GLLADGQDQQ TNSVYHPLQQ  120
AEEENQLHDN VESNEMLRNN SSSETDSDSS SGSDSDSEVG KYFYPQIEQL EMAKQPEPGM  180
KFQTLEDAHR FYNTYALLTG FEAKRGTNYM RKKFHLICNR SGKSRATPDL QRKRKRKSIE  240
KTNCQAKVIV KLTKGQWEFT TVRNEHNHPL CPSASLTKFY LSHKHISTEE RSFLKVLQRT  300
RIPPNKVMKI FRRMRGSFGS IPFKKKDGTN LLCAEQHRKE NSDVGRMLMY FKEKELQDPS  360
FQCMKQTDED NIVRSVFWTD ARSRMDYEIF GDFLLFDTTY TTDRHNMLFA PIIGLNNHGK  420
TLLLGCALLH DESTETYKWM FETLLHVMED KMPVSIITNQ DEAMAKAIGE VMPQVRHRLC  480
KWDVLEKAQQ NISAFIAESG NIKADLDSLV DNSLTEKEFE EGWDALIERY GASENKYLQI  540
LWQRRKNWVP VYFREDFYPF VQSHGCDKGM NLLFNDYVLS IDRIEKFIER YEEIYKNITK  600
TDEEDRLQTG TVPSCFSLQP IEKHAADIYT RQIFLKVQRE LLHSTAFNVQ EVQRGAVYRL  660
NKVFNYENPE FDRNNFEVQV ESGTNAFKCQ CAKFTRDGVL CCHIFRLFTQ FGINQIPEQY  720
IVPRWTEKFR EEKEKQYKEK CSEQMDTTMR YTNFMTKMAD LGKTICSDGA KYDAFMLEVD  780
KIQENFATAQ K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601620.0AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234143.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_014755403.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLW5FMG90.0W5FMG9_WHEAT; Uncharacterized protein
STRINGMLOC_75367.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-80FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]